I've only played the Wii version, but im gonna say Gamecube lol.
It is the Canon version, and i don't like the flipped map (though it's what im used to)
Also the controls. Skyward sword was what the first zelda wii title should've done but TP didn't do that. They had the little waggle and some nunchuck thrusts, plus some aiming for shooting things. Don't get me wrong, I love these, but if they didn't have any substantial use foir the wiimote, just use regular button controls so i dont have to hold my wrist steady everytime im aiming at a hookshot target at an awkward angle