Hmm...
Well, if you played OoA first, Nayru says
Oh, hero of the essences, do you remember Nayru, Oracle of Ages? You've beaten Onox, but Twinrova's plans have not failed! Hurry! The hour of the Evil King's return is near!
In both cases, they just seem to be making sure he remembers. Which is different from Zelda's intro to Link, as it seems that she only knows him by reputation:
Thank you for saving me from danger. My name is Zelda. You must be Link. I knew it at first glance.
Other than Zelda's introduction, yes, OoX fits fine after ALttP. But then where does LA go? I quoted the manuals for OoS and LA, and the stories just don't line up. That would require LA to go after AoL, which is fine I guess...
ALttP/OoX--LoZ/AoL/LA
That could work, but I think these points are trivial. If the timeline were written as a novel, the order of Ganon revivals would flow better like this:
1.ALttP/LA: Ganon is killed with the silver arrows. This is like the false climax. Because...
2.LoZ/AoL: He is revived once. Link kills him with the silver arrows. Ganon's minions try to revive him but fail. This is like a miniature resolution before the surprise climax.
3.OoX: Hyrule seems to be at peace. But at the very end, Ganon is revived (mindless)! Then he is killed.
I this were read as a novel, you totally would not expect Ganon to come back, because a previous attempt to revive him failed!
In your version:
1.ALttP/OoX: Ganon is killed, and kinda revived, but the same Link kills him dead.
2.Loz: Ganon is revived again, dies.
3.AoL: Ganon is attempted to be revived.
I feel mine packs more punch. But like I said, the reason that I have to use tone/mood to base my opinions is because the placement here is so trivial, with no real issues either way.
EDIT: Kinda had a change of heart. My new idea is to keep as much of Nintendo's timeline that makes sense. There are only two parts of their timeline I disagree with. The third split, and the placement of Four Swords. Splitting FS from FSA is like splitting LoZ from AoL. Whatever.
Final for now:
--------------/--WW/PH--ST
SS--TMC--OoT
--------------\MM--TP--FS/FSA--ALttP/OoX/LA--LoZ/AoL
If anyone wants to post, post! But this thread has already been buried...