Here is my Top 5. Also this list is not my final judgement, it is far from it.
1.The Legend of Zelda: A Link to The Past/Skyward Sword(SNES and Wii)
2.Sonic 3 and Knuckles/Sonic Adventure 2(GEN and GC)
3.Super Mario World(SNES)
4.Silent Hill 2(PS2)
5.007 GoldenEye(N64)
Like I said before, this is not my final list, but it is close.