^Of course. LA was clearly meant to take place after LttP at the time of its release.
But that was before OoX, which makes you have to consider that maybe OoX was made to go before LA (thus retconning LttP/LA).
You can't just dismiss it because of original intent. Because it has a LOT of evidence. When you look at the evidence, it has just as much as LttP/LA. Essentially everything that LttP/LA has, OoX/LA has (plus OoX Link is all "I'M ON A MOTHER ****IN' BOAT!"
) about as much (there are some exceptions to both sides. Agahnim appears in LttP, whereas OoX/LA has atleast twice as much, close to three times as much, of exclusive enemies shared between OoX and LA than LttP and LA share. Could just be laziness, but notice the Agahnim shadow uses pretty much the same sprite as in LttP so that could just as easily be developer laziness).
You should really clear your preconceived bias of LttP/LA and look at both sides and see which one has the most evidence/intent.
I'm having a lot of trouble myself making the decision. LttP/LA was confirmed at one point, whereas OoX/LA has that freaken ending which is soooooo remniscent of LAs beginning.
PS. I'm on a different comp for the next week that has no spell-check. So you might notice some typos