Best Incarnation of Link: Skyward Sword
Best Incarnation of Zelda: Skyward Sword, easily
Best Item: Bow
Funniest Moment: Groose arrives on the surface
Best Boss: Stallord
Best Guide: Midna
Best Dungeon: Shadow Temple
Best Character: Groose
Best Song: Song of Storms (but if I could pick any option, it'd be the Ballad of the Wind Fish from LA, or the MM Clock Town theme, or the original Legend of Zelda theme.)
Best Game: Majora's Mask!