LA clearly has to be somewhere near ALttP, wether you try to fit OoX in the middle or not, that's your choice.
The game makes lots of references to ALttP and some subtler references to OoX(King Moblin, for example).
It contains more references to OoX.
List some for LttP, OoX likely has just as many or more of the same kind.
^ Both ALTTP and LoZ/AoL were created long before there was any intention of an all out timeline so the fact that those games have gaps is not much of a problem as long as you keep that in mind. Also, ALTTP has been retconned to fit much better in the timeline.
1) There was intent for the timeline *glances at LttP box* 2) And, no, the retcons don't make it fit better. It makes it much more ambiguous, and FSA ****s it up even worse.
My point is that NO MATTER where you put them, there will always be AT LEAST one unexplained reoccurance of Ganon. Actually, if you put LoZ/AoL on a different timeline than ALTTP then you would get 2 unexplained reoccurances of Ganon. Putting them on the same timeline knocks it down to 1 based on my explanation of where it goes.
Not quite. River Zora's timeline has perfect Ganon continuity.
LttP Ganon comes from, well, LttP's backstory. LttP's backstory explains it pretty well. Ganondorf touched the Triforce on the CT and became Ganon, got sealed, then got out in LttP.
Then on the AT TMC-FS/FSA-LoZ/AoL happens. FSA seals Ganon, and then LoZ/AoL Ganon would come from that.
It flows surprisingly well.