I havent put together a complete timeline yet, but heres all i know about when the games take place. i hope it helps
LoZ-not the first chronologically, i think it comes before MC, with no evidence to back that up -.-
AoL-takes place directly after LoZ
ALttP-I thinks this one is the first
LA-directly after ooX, second quest.
OoX-idk, but they take place at the same time
OoT-last game before the split:MM-WW
MM-directly after Oot
WW-after MM
MC-somewhere between LoZ and FS
FS-between MC and FSA
FSA-ummm...after FS
TP-honestly, idk
PH-directly after WW, obviously
ST-idk much cuz its not out yet, but i know it is not a sequel to PH
LoZ-not the first chronologically, i think it comes before MC, with no evidence to back that up -.-
AoL-takes place directly after LoZ
ALttP-I thinks this one is the first
LA-directly after ooX, second quest.
OoX-idk, but they take place at the same time
OoT-last game before the split:MM-WW
MM-directly after Oot
WW-after MM
MC-somewhere between LoZ and FS
FS-between MC and FSA
FSA-ummm...after FS
TP-honestly, idk
PH-directly after WW, obviously
ST-idk much cuz its not out yet, but i know it is not a sequel to PH