I've made myself a more complicated ranking system for the Zelda games, simply because I find it hard to make a definite list ranking them in a specific order. Instead I've made groups that describe my relationship to the games and rank the games within their respective group.
Group A: My favourites
1. Breath of the Wild
2. A Link Between Worlds
3. Wind Waker
4. Twilight Princess
5. Ocarina of Time
6. Minish Cap
Each six of these titles are games I've thoroughly enjoyed and will happily replay. I love them to death. I will say that there's a larger gap between BotW and the other five, simply because BotW is in its own league in a way. I love each of these games, and even the issues I have with them are so minor or so to the sidelines that it doesn't matter.
Group B: Like, but aren't favourites
1. Oracle of Seasons
2. Link's Awakening
These two I enjoy, but not quite to the degree of my top 6, I might play them again, but it's not a priority for me.
Group C: Love/hate
1. Skyward Sword
2. Spirit Tracks
3. Majora's Mask
There are things in these games I really, really love, but at the same time there are things in these games that makes me put them down and not want to continue playing. With SS it's the motion controls issues and the dreaded silent realms, with ST it's the stylus controls dampening the fun, with MM it's not just the 3 day cycle, but I just can't seem to get into the side-quests that everyone raves about. I just lack the patience and interest to bother with them.
Group D: Replaced by another title
1. Oracle of Ages (OoS)
2. A Link to the Past (ALBW)
3. The Legend of Zelda (BotW)
With the first two I played another title before them that was a similar, but more engaging experience for me, and with the third it just didn't engage me. I didn't hate it, but it was relatively boring for me, and now definitely with BotW there is no need for me to ever try playing it again.
Group E: Hated upon playing
1. The Adventures of Link
I don't mind a challenge, but at least give me the chance to learn before killing me off and sending me to the beginning... this is the game I ragequit and I don't ever want to play it again.