No. They're all fantastic in their own way. Each of them is a different experience, and bring something new to the series. That said, I'm not saying they're all flawless, but I have to say that in every single game, there's been something that pulled me in and made me love it, flaws and all.
Though I used to dislike Link's Awakening, though now (after actually sticking at playing it, and finding the thing that made me love it) I'm not sure why I didn't like it in the first place. Maybe because it was different, or I didn't know what to do? I don't know. It was a silly reason, whatever it was :3
OH! And I used to detest Phantom Hourglass at one point, but again, when I actually played it, I found it was really quite charming and addictive, and now I love it as much as the rest of them~