I'm not able to make a rank list, so I just tell you the dungeons I found most awesome:
- Stone Tower Temple (MM)
- Snowhead Temple (MM)
- Great Bay Temple (MM)
- Water Temple (OoT)
- Forest Temple (OoT)
- Spirit Temple (OoT)
- Turtle Rock (ALTTP)
- Turtle Rock (ALBW)
- Lorule Castle (ALBW)
-...