I personally like Twilight Princess better than Skyward Sword, mainly because I had the GC TP and I enjoy using a controller more than motion controls. Another thing is I felt cramped in SS, there was like 3 places. I believe TP had one of the best Maps most definatly.
I REALLY disliked Skywards controls,The only reason why is because I HAD TO RECALIBRATE EVERY TEN SECONDS. I swing left, he charges up a skyward strike. I wished they added a controller option. I would have been satisfied using the classic controller over the wii mote