LA, WW, OoT, MC, ALttP, FS, MM, FSA, PH, OoA, OoS, TP, ST, OoTMQ LoZ, AoL, OoT3D/MQ, SS, ALBW, WWHD, MM3D, TFH, TPHD.
I think that's the order I beat them in. I might have them mixed up a little.
Spin-offs Link's Crossbow Training and Hyrule Warriors fit in there somewhere