- If you trust your ability to survive inside the tower you can swap out the Red Potion for a Green Potion since you'll need the magic later. Once you have that, warp to the Tower of the Gods and the Triforce will reveal a path to Hyrule. The King of Red Lions tells you that it's proof that you are the true hero. Head into the yellow circle to return to Hyrule.

- Back in Hyrule, head into the castle and you'll see that the statue has been destroyed. Head downstairs to speak to Zelda and you'll find out it was an illusion created by Ganondorf. She'll disappear and flames will arise. Two mighty Darknuts drop from a hole in the ceiling and try to attack Link. When you have control, defeat them and go back upstairs.

- The path is pretty straightforward, just kill the enemies along the way. Once you kill the Darknut at the top, use the boomerang to kill the Keese hanging under the targets, then use your Hookshot to get to the targets and into the Tower itself.

- The easiest way to approach this room is to first use your bow to shoot all the skulls off of the top of the spiked vines to kill all the Red Bubbles before they become a threat. Then use your Grappling Hook to get across the room.

- The easiest way that I've found to do this is to grapple, climb to the top, then jump and use the Deku Leaf. Adjust the camera so you can see below you, then drop onto the hardened lava spots. You have to do this for the last one anyway.

- Once you've made your way across the room, head through the door on the opposite side and some familiar music should begin to play. It's Gohma! You have the same items you did when you were in Dragon Roost plus all your bottles. Defeat Gohma the same way and you'll be transported back and her image will light up. Three to go.

- When the platform is at its low point hit the switch behind the giant vine near the wall to get the other cart over to you. Jump onto it from the high point and blow your way back over to the other platforms.

- Hop across these platforms and jump from the highest one, using the Deku Leaf to float across to the other side. Be weary of the Peahats though, they'll try to knock you out of the air.

- Once you're across break the nuts for some magic and head through the door. Kalle Demos is back, again in black and white. Defeat him in the same manner you did before and you'll be warped out, lighting up Kalle Demos's image.

- Go up the stairs and run down the next hallway dropping all the coffins. Run back and turn a Purple ChuChu into stone. Set him on the switch and run back down the hallway as fast as you can. Get to the stairs and you're good, if you miss just try again.

- Run down the hall and drop all the coffins again, then turn another Purple ChuChu to stone. Set him on the switch and run back to get to the stairs in time. Head through the door once you've made it to face Jalhalla one more time. Defeat him in the same way that you did while you were in the Earth Temple and he'll disappear, teleporting you back to the main room and lighting up his image on the door in the middle.

- Climb up and avoid the blade trap while getting closer to the two spinning cyclones. Jump right between them, using the Deku Leaf to clear the gap Kill the two Green Bokoblins that appear and then hookshot your way to the top. Head through the door.

- Defeat Molgera as you did in the Wind Temple and you'll be transported to the main room once more. Molgera's image will light up and the door will crumble, leaving a path for you to take to get further into the Tower.

- Head through this newly opened path to dive deeper into the Tower and continue along the quest to save Princess Zelda.

- Go through the door directly across from you and use the boomerang to target the switches in the order from the previous room. A portal will appear, allowing you to leave the tower and reach the Forsaken Fortress if ever you need to restock on supplies. Head back into the room with the torches.

- Jump down into the darkness and you'll be attacked by Phantom Ganon again. His tactics have changed a little though. He'll form several copies of himself and try to attack you. Just parry one of them to avoid the attack and he'll disappear. He'll reappear and you must bounce the ball of light back to him until it hits him. Once it does, he'll vanish and his sword will fall. The handle will point to the door you need to go through next.

- Continue up the stairs and you'll find a Shielded Darknut waiting for you on the next landing. Break the pots here for some hearts and magic, then continue up the stairs to meet two more moblins. Break the pots for some magic and head up the final set of stairs to meet two Mighty Darknuts.

- Once they are defeated the bar over the door will lift, allowing you to enter. Break the pots for some last minute items and hearts, then head through the door.

- Link enters the room to see a raised area in the middle. He begins walking to it and sees Zelda lying on the bed. Ganondorf tells Link of Zelda's dreams and the the gods destroyed Hyrule. He's been waiting for Link, then begins a grotesque transformation into... a puppet?

- A rope will be left in the center of the room. Jump off of the middle square to reach it and climb to the top. Once there you should notice another section that you can use the grappling hook to reach. Do so and climb that section as well.

- In the middle of this area there are some pots you can break for some magic and hearts. There is also another grapple point almost opposite where you climbed up.

- Climb this point too and burn the top off of the pot with a fire arrow. Work your way around towards the large area out of the wall and use your hookshot to reach it. Head outside.

- Suddenly, the King of Hyrule appears and touches the Triforce before Ganondorf is able to reach it. He wishes that Link and Zelda have hope, a future. He wishes for Hyrule to be washed away and for hope to shine forth, and to let their destinies be fulfilled. Ganondorf laughs as water begins to pour down into Hyrule and says there is no future for them. Zelda arises and gives Link the Master Sword and takes your bow.

- He wants you to live for the future and tells you to look forwards and walk a path of hope.  He bids you farewell and asks for your forgiveness.  Zelda asks the king to come with and says the sea will be the next Hyrule.  The king tells her it will not be Hyrule, but it will be your land.

- The gods grant the King’s wish and Hyrule is flooded.  Link and Zelda float up to the surface and the king tells you he has scattered the seeds of the future.  Link and Zelda wake up floating in the ocean and Komali finds them.  The pirates find them as well and everyone is happy.