Warning: Much of these oddities will contain spoilers, so read at your own risk.

Sheathing Link's Sword
- After you defeat an enemy (most likely only the hard enemies), press A without moving and Link will perform an awesome looking scene of Link spinning, then sheathing his sword.

Talk to Epona
- If you transform into Wolf Link, you can talk to Epona. She will just tell you to transform back into a human.

Accurate Night Sky
- At night, if you watch closely, it si very accurate to the real night's sky. Stars are the correct brightness, the moon moves, and you will find numerous similar constellations.

The Same Hyrule
- The Hyrule in TP is geographically the same as it was in Ocarina of Time, with the exception of the Wii version since its flipped. (this proves the timeline theory of TP placing after OoT)

Howling Stone Flashback
- All howling stone songs are either from Ocarina of Time or Majora's Mask.

The Bottomless Pit
- Visiting Diababa's Lair twice will reveal a bottomless pit of water.

The Ooccoo Palette
- The name Ooccoo is actually the color coding of Link's tunic from the original Legend of Zelda game. It spells out "00CC00", try it out..it is the original color green.

Link the Theif
- On your quest to the Forest Temple, you will find a small hut selling potions and oil runned by a bird. You can dip your bottle into the pot and walk away, hence stealing it. The bird will then attack you and call you a thief (a small reference to Link's Awakening as Link was able to steal items as well).

Link Can Now Open Doors
- Well he was always able to, but in TP most of the dungeons Link must grab the door and open it himself (this was the first Zelda game that showed Link doing that). Most of the time in the games (even in the final dungeons of TP) the dor will open automatically.

Green Jelly?
- If the blue and yellows chus merge into eachother, it will create a green chu which in one point in the game would give you green potion giving you the ability to refill your magic. But since the magic bar was taken out of the game, this is impossible. Beta screens will show this magic meter.

"It's a Secret to Everybody"
- If you talk to the Goron at the top of the outlook, he will tell you, 'It's a Secret to Everybody'...refering to the Moblin Hideouts in the original Legend of Zelda.